Titel
Probing RNA dynamics via longitudinal exchange and CPMG relaxation dispersion NMR spectroscopy using a sensitive 13C-methyl label
Autor*in
Romana Spitzer
Medizinische Universität Innsbruck
Autor*in
Martin Tollinger
Leopold-Franzens-Universität Innsbruck
... show all
Abstract
The refolding kinetics of bistable RNA sequences were studied in unperturbed equilibrium via 13C exchange NMR spectroscopy. For this purpose a straightforward labeling technique was elaborated using a 22 -13C-methoxy uridine modification, which was prepared by a two-step synthesis and introduced into RNA using standard protocols. Using 13C longitudinal exchange NMR spectroscopy the refolding kinetics of a 20nt bistable RNA were characterized at temperatures between 298 and 310K, yielding the enthalpy and entropy differences between the conformers at equilibrium and the activation energy of the refolding process. The kinetics of a more stable 32nt bistable RNA could be analyzed by the same approach at elevated temperatures, i.e. at 314 and 316K. Finally, the dynamics of a multi-stable RNA able to fold into two hairpin-and a pseudo-knotted conformation was studied by 13C relaxation dispersion NMR spectroscopy.
Objekt-Typ
Sprache
Englisch [eng]
Persistent identifier
https://phaidra.univie.ac.at/o:244176
Erschienen in
Titel
Nucleic Acids Research
Band
39
Ausgabe
10
Seitenanfang
4340
Seitenende
4351
Erscheinungsdatum
01.02.2011
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