Titel
Protex—A Python utility for proton exchange in molecular dynamics simulations
Autor*in
Abstract
Protex is an open-source program that enables proton exchanges of solvent molecules during molecular dynamics simulations. While conventional molecular dynamics simulations do not allow for bond breaking or formation, protex offers an easy-to-use interface to augment these simulations and define multiple proton sites for (de-)protonation using a single topology approach with two different λ-states. Protex was successfully applied to a protic ionic liquid system, where each molecule is prone to (de-)protonation. Transport properties were calculated and compared to experimental values and simulations without proton exchange.
Stichwort
molecular dynamicsionic liquidsdynamic propertiesproton exchangeconductivity
Objekt-Typ
Sprache
Englisch [eng]
Persistent identifier
Erschienen in
Titel
Frontiers in Chemistry
Band
11
ISSN
2296-2646
Erscheinungsdatum
2023
Publication
Frontiers Media SA
Projekt
Kod / Identifikator
I4383N
Erscheinungsdatum
2023
Zugänglichkeit
Rechte
Rechteangabe
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